GgaEX1005394 @ galGal4
Exon Skipping
Gene
ENSGALG00000005752 | ABCA4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N8D7]
Coordinates
chr8:12634524-12638472:+
Coord C1 exon
chr8:12634524-12634746
Coord A exon
chr8:12636514-12636735
Coord C2 exon
chr8:12638268-12638472
Length
222 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCCTTTTGCTTACAGCAT
3' ss Score
9.36
5' ss Seq
GCAGTAAGC
5' ss Score
5.06
Exon sequences
Seq C1 exon
CTTTATGATAACCTTAAACCGCTCCTTTCCCATCTTCATGGTGCTTGCTTGGATATATTCCGTTTCCATGACTGTGAAGAGTATAGTTTTGGAGAAGGAAATGCGTCTAAAGGAGGCTATGAAGAACAGAGGCGTCACTAATGGAGTGATTTGGTGCACTTGGTTCCTAGACAGCTTCTTCATGATGGCTGTGAGCACATTCCTCCTCACAGCACTGATTATG
Seq A exon
CATGGCCAAGTCCTGCATTATAGCAGTCCTCTTCTCTTCTTCCTATTCCTACTGACATTCTCTACAGCCACCATAATGCAATGTTTCTTGTTCAGCACCTTTTTCTCCAAAGCAAATCTGGCAGCTGCCTGCAGTGGTGTCCTGTACTTCACCTTGTACCTGCCTCACATTGTCTGCTTTGTCTGGCAAGATCGCATCACTGTTAATCTGAAGATCCTAGCA
Seq C2 exon
AGTTTGCTTTCTCAAGTAGCTTTTGGTTTTGGTACAGAATACTTGTCACGCTATGAAGAGCAAGGTCTTGGCCTACAGTGGGGTAACATCAGAACCAGTCCCTTGGAAGGAGATGAATATAGTTTTCTGTTTTCCATTAAAATGATGCTTTTTGATGCTTTTCTGTATGGAATACTTTCTTGGTACCTTGATCATGTTTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(21.4=100)
A:
PF126982=ABC2_membrane_3=FE(21.1=100)
C2:
PF126982=ABC2_membrane_3=PD(17.6=88.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGCTCCTTTCCCATCTTCA
R:
TGTTACCCCACTGTAGGCCAA
Band lengths:
294-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]