BtaEX6046615 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001932 | MGC142781
Description
Bos taurus carnitine O-acetyltransferase (CRAT), mRNA. [Source:RefSeq mRNA;Acc:NM_001075587]
Coordinates
chr11:99579020-99580007:-
Coord C1 exon
chr11:99579885-99580007
Coord A exon
chr11:99579661-99579796
Coord C2 exon
chr11:99579020-99579082
Length
136 bp
Sequences
Splice sites
3' ss Seq
TCAGCGCCTTTCCCACCCAGGAT
3' ss Score
7.04
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
CATGATCCAGGACCTGGACATCACGGTAATGGTGTTCCACCACTTTGGAAAGGACTTCCCCAAATCGGAGAAGCTGAGCCCAGATGCCTTCATCCAGATGGCACTGCAGCTGGCCTACTACAG
Seq A exon
GATCTACGGGCAGGCTTGTGCCACCTACGAAAGCGCCTCTCTGCGCATGTTCCACCTGGGCCGGACTGACACCATCCGCTCAGCCTCCATGGACTCACTGACCTTCGTCAAGGCCATGGATGATCCCAATGTGACG
Seq C2 exon
GAACATGAGAAGGTGGAGCTGCTGCGGAAGGCCGTGCAGGCCCACCGAGCCTACACCGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001932-'16-31,'16-28,17-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=FE(7.0=100)
A:
PF0075515=Carn_acyltransf=FE(7.7=100)
C2:
PF0075515=Carn_acyltransf=FE(3.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACCTGGACATCACGGTA
R:
CGGTCGGTGTAGGCTCGG
Band lengths:
178-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]