DreEX0024139 @ danRer10
Exon Skipping
Gene
ENSDARG00000040248 | crata
Description
carnitine O-acetyltransferase a [Source:ZFIN;Acc:ZDB-GENE-040927-17]
Coordinates
chr5:32228210-32229345:+
Coord C1 exon
chr5:32228210-32228332
Coord A exon
chr5:32228435-32228570
Coord C2 exon
chr5:32229283-32229345
Length
136 bp
Sequences
Splice sites
3' ss Seq
GTGTGCACTGATTGTTTCAGGAT
3' ss Score
8.25
5' ss Seq
CATGTGCGC
5' ss Score
2.74
Exon sequences
Seq C1 exon
CATGGTTCATGACCTGGACCTGAGAGTCAATGTGTTCACCCATTTTGGTAAAAATTTCCCAAAGTCTCAGAAGATGAGCCCTGATGCCTTTATTCAGATGGCTCTTCAGTTGGCGTACTATAG
Seq A exon
GATTTACAAGCGCTGTTGTCCCACCTATGAAAGCGCTTCACTTCGCATGTTCAGACTGGGCCGAACAGATACGATACGCTCGGCATCCAGCGACTCCGCCAGCTTTGTCAAAGCTATGGACGATCCTGTCAAACAT
Seq C2 exon
AACACAGAGAAAGTGGCTCTGCTGGACAAAGCCGTTAAAGCACACAGATCTTACACAGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040248-'12-16,'12-15,13-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=FE(7.0=100)
A:
PF0075515=Carn_acyltransf=FE(7.7=100)
C2:
PF0075515=Carn_acyltransf=FE(3.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATGACCTGGACCTGAGAGT
R:
ATCTGTGTAAGATCTGTGTGCT
Band lengths:
178-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]