GgaEX0006006 @ galGal4
Exon Skipping
Gene
ENSGALG00000004466 | CRAT
Description
carnitine O-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:2342]
Coordinates
chr17:5497558-5498418:-
Coord C1 exon
chr17:5498296-5498418
Coord A exon
chr17:5498079-5498214
Coord C2 exon
chr17:5497558-5497620
Length
136 bp
Sequences
Splice sites
3' ss Seq
GACTCTTCTCCATCTCCCAGGAT
3' ss Score
9.13
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CATGGTCGAAGACCTGGATATCAAAGTGATGGTCTTCCATCAATTTGGGAAAGCCTTCCCCAAGTCAGAGAAGATAAGTCCCGATGCTTTTATCCAGCTGGCCTTGCAGCTAGCATATTACAG
Seq A exon
GATGTATGGCCATGCCTGTCCCACGTATGAGAGTGCCTCACTAAGGATGTTCCGTTTGGGCCGCACAGACACCATCCGCTCTGCTTCTATTGAGTCTCTTAAGTTTGTACAGTCCATGGACAGCCCTGACAAATCG
Seq C2 exon
GACCAGGTGAAAACAGATTTGCTGAGGAGAGCTACCCAGGCCCACAGGGAATACACAGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004466_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.286
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=FE(7.0=100)
A:
PF0075515=Carn_acyltransf=FE(7.7=100)
C2:
PF0075515=Carn_acyltransf=FE(3.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAGACCTGGATATCAAAGTGA
R:
ATCTGTGTATTCCCTGTGGGC
Band lengths:
178-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]