HsaEX6063406 @ hg19
Exon Skipping
Gene
ENSG00000095321 | CRAT
Description
carnitine O-acetyltransferase [Source:HGNC Symbol;Acc:2342]
Coordinates
chr9:131859529-131860650:-
Coord C1 exon
chr9:131860528-131860650
Coord A exon
chr9:131860292-131860427
Coord C2 exon
chr9:131859529-131859591
Length
136 bp
Sequences
Splice sites
3' ss Seq
TTAGCCCCATTTCCCACCAGGAT
3' ss Score
7.84
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
CATGATCCAGGACCTGGATATCACCGTGATGGTGTTCCACCATTTTGGAAAAGACTTCCCCAAGTCGGAGAAGCTAAGCCCAGATGCCTTCATCCAGATGGCTTTGCAGCTGGCCTACTACAG
Seq A exon
GATCTACGGACAGGCATGTGCCACCTATGAAAGTGCCTCCCTGCGCATGTTTCACCTGGGCCGCACCGACACCATCCGCTCGGCTTCCATGGACTCACTCACCTTTGTCAAGGCCATGGATGACTCCAGCGTCACG
Seq C2 exon
GAGCACCAGAAGGTGGAGCTGCTGCGGAAGGCCGTGCAGGCCCACCGAGGCTACACCGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095321-'21-22,'21-19,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=PU(30.1=97.6)
A:
PF0075515=Carn_acyltransf=FE(33.8=100),PF151201=DUF4561=PU(29.9=50.0)
C2:
PF0075515=Carn_acyltransf=FE(15.8=100),PF151201=DUF4561=FE(27.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCTGGATATCACCGTGA
R:
CCGGTCGGTGTAGCCTCG
Band lengths:
178-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)