HsaEX6063406 @ hg38
Exon Skipping
Gene
ENSG00000095321 | CRAT
Description
carnitine O-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:2342]
Coordinates
chr9:129097250-129098371:-
Coord C1 exon
chr9:129098249-129098371
Coord A exon
chr9:129098013-129098148
Coord C2 exon
chr9:129097250-129097312
Length
136 bp
Sequences
Splice sites
3' ss Seq
TTAGCCCCATTTCCCACCAGGAT
3' ss Score
7.84
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
CATGATCCAGGACCTGGATATCACCGTGATGGTGTTCCACCATTTTGGAAAAGACTTCCCCAAGTCGGAGAAGCTAAGCCCAGATGCCTTCATCCAGATGGCTTTGCAGCTGGCCTACTACAG
Seq A exon
GATCTACGGACAGGCATGTGCCACCTATGAAAGTGCCTCCCTGCGCATGTTTCACCTGGGCCGCACCGACACCATCCGCTCGGCTTCCATGGACTCACTCACCTTTGTCAAGGCCATGGATGACTCCAGCGTCACG
Seq C2 exon
GAGCACCAGAAGGTGGAGCTGCTGCGGAAGGCCGTGCAGGCCCACCGAGGCTACACCGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095321-'28-37,'28-34,29-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=PU(30.1=97.6)
A:
PF0075515=Carn_acyltransf=FE(33.8=100)
C2:
PF0075515=Carn_acyltransf=FE(15.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCTGGATATCACCGTGA
R:
CCGGTCGGTGTAGCCTCG
Band lengths:
178-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains