GgaEX0006006 @ galGal3
Exon Skipping
Gene
ENSGALG00000004466 | F1NSE3_CHICK
Description
NA
Coordinates
chr17:6053478-6054338:-
Coord C1 exon
chr17:6054216-6054338
Coord A exon
chr17:6053999-6054134
Coord C2 exon
chr17:6053478-6053540
Length
136 bp
Sequences
Splice sites
3' ss Seq
GACTCTTCTCCATCTCCCAGGAT
3' ss Score
9.13
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CATGGTCGAAGACCTGGATATCAAAGTGATGGTCTTCCATCAATTTGGGAAAGCCTTCCCCAAGTCAGAGAAGATAAGTCCCGATGCTTTTATCCAGCTGGCCTTGCAGCTAGCATATTACAG
Seq A exon
GATGTATGGCCATGCCTGTCCCACGTATGAGAGTGCCTCACTAAGGATGTTCCGTTTGGGCCGCACAGACACCATCCGCTCTGCTTCTATTGAGTCTCTTAAGTTTGTACAGTCCATGGACAGCCCTGACAAATCG
Seq C2 exon
GACCAGGTGAAAACAGATTTGCTGAGGAGAGCTACCCAGGCCCACAGGGAATACACAGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004466_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.286
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=FE(7.7=100)
A:
PF0075515=Carn_acyltransf=FE(8.5=100)
C2:
PF0075515=Carn_acyltransf=FE(3.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAGACCTGGATATCAAAGTGA
R:
ATCTGTGTATTCCCTGTGGGC
Band lengths:
178-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]