MmuEX6100283 @ mm9
Exon Skipping
Gene
ENSMUSG00000026853 | Crat
Description
carnitine acetyltransferase [Source:MGI Symbol;Acc:MGI:109501]
Coordinates
chr2:30260048-30260808:-
Coord C1 exon
chr2:30260686-30260808
Coord A exon
chr2:30260458-30260593
Coord C2 exon
chr2:30260048-30260110
Length
136 bp
Sequences
Splice sites
3' ss Seq
GAGACCCACCTCCCACGCAGGAT
3' ss Score
5.13
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
CATGATCCAGGACCTGGACATCATGATGCTGACGTTCCATCACTTTGGAAAGGACTTCCCCAAGTCCGAGAAGCTAAGCCCTGATGCCTTCATCCAGGTAGCCCTGCAGCTGGCATACTACAG
Seq A exon
GATCTATGGGCAGGCGTGTGCCACGTATGAAAGTGCCTCTCTGCGCATGTTTCACCTGGGCCGCACTGACACCATCCGCTCAGCCTCCATAGACTCGCTGGCCTTTGTCAAAGGCATGGGTGACTCCACAGTGCCG
Seq C2 exon
GAGCAGCAGAAGGTGGAGCTGCTCCGGAAGGCTGTGCAGGCCCACCGAGCCTACACTGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026853-'24-30,'24-28,25-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=PU(30.1=97.6)
A:
PF0075515=Carn_acyltransf=FE(33.8=100)
C2:
PF0075515=Carn_acyltransf=FE(15.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACCTGGACATCATGATGC
R:
CGGTCAGTGTAGGCTCGGT
Band lengths:
178-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: