MmuEX6100283 @ mm10
Exon Skipping
Gene
ENSMUSG00000026853 | Crat
Description
carnitine acetyltransferase [Source:MGI Symbol;Acc:MGI:109501]
Coordinates
chr2:30404528-30405288:-
Coord C1 exon
chr2:30405166-30405288
Coord A exon
chr2:30404938-30405073
Coord C2 exon
chr2:30404528-30404590
Length
136 bp
Sequences
Splice sites
3' ss Seq
GAGACCCACCTCCCACGCAGGAT
3' ss Score
5.13
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
CATGATCCAGGACCTGGACATCATGATGCTGACGTTCCATCACTTTGGAAAGGACTTCCCCAAGTCCGAGAAGCTAAGCCCTGATGCCTTCATCCAGGTAGCCCTGCAGCTGGCATACTACAG
Seq A exon
GATCTATGGGCAGGCGTGTGCCACGTATGAAAGTGCCTCTCTGCGCATGTTTCACCTGGGCCGCACTGACACCATCCGCTCAGCCTCCATAGACTCGCTGGCCTTTGTCAAAGGCATGGGTGACTCCACAGTGCCG
Seq C2 exon
GAGCAGCAGAAGGTGGAGCTGCTCCGGAAGGCTGTGCAGGCCCACCGAGCCTACACTGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026853-'31-46,'31-43,33-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=PU(30.1=97.6)
A:
PF0075515=Carn_acyltransf=FE(33.8=100)
C2:
PF0075515=Carn_acyltransf=FE(15.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACCTGGACATCATGATGC
R:
CGGTCAGTGTAGGCTCGGT
Band lengths:
178-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types