RnoEX0024393 @ rn6
Exon Skipping
Gene
ENSRNOG00000018145 | Crat
Description
carnitine O-acetyltransferase [Source:RGD Symbol;Acc:1303031]
Coordinates
chr3:8970418-8971174:-
Coord C1 exon
chr3:8971052-8971174
Coord A exon
chr3:8970821-8970956
Coord C2 exon
chr3:8970418-8970480
Length
136 bp
Sequences
Splice sites
3' ss Seq
GAGATCCTCCTCCCACCCAGGAT
3' ss Score
5.56
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
CATGATCCAGGACCTGGACATCATGATGCTGGTTTTCCATCACTTTGGAAAGGACTTCCCCAAGTCCCAGAAGCTAAGCCCTGATGCCTTCATCCAGATAGCCCTGCAGCTGGCATACTACAG
Seq A exon
GATCTATGGGCAGGCGTGTGCCACGTATGAAAGCGCCTCTCTGCGCATGTTTCACCTGGGCCGCACTGACACCATCCGCTCCGCCTCCACAGACTCGCTGGCCTTTGTCAAAGGCATGGATGACCCCAAAGTGCCG
Seq C2 exon
GAGCAGCAGAGGGTGGAGCTGCTTCGAAAGGCTGTGCAGGCCCACCGAGCCTACACCGACCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018145-'26-39,'26-36,30-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=FE(7.0=100)
A:
PF0075515=Carn_acyltransf=FE(7.7=100)
C2:
PF0075515=Carn_acyltransf=FE(3.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACCTGGACATCATGATGC
R:
CGGTCGGTGTAGGCTCGG
Band lengths:
178-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]