BtaEX6047224 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023933 | SEC16A
Description
SEC16 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr11:103939070-103941058:-
Coord C1 exon
chr11:103940999-103941058
Coord A exon
chr11:103940112-103940189
Coord C2 exon
chr11:103939070-103939327
Length
78 bp
Sequences
Splice sites
3' ss Seq
GGCCTCTGTGTGCTCCCCAGGCT
3' ss Score
8.48
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CTTTCGCGCTGTAGTTCACTGAGCTCGTTATCACGGGAAGTGAGCCAGCATTTTAACCAG
Seq A exon
GCTCCCGGTGCTCTCGCCCCTGCTGGGGCCCCTTCTGGGGCTGCGGTGCCCTTCTACAACCCTGCTCAGTTTGCACAA
Seq C2 exon
GCCCCTGCTGCCTCAGGAAGCTCAAGGACGGGGAGGATTGGCCAGAGGAAGTACCCGGCGTTAAGCTAGAAGGGCCGCGTCCTGGAGCAGCACCGGGACGGGAGATGGCTGTTCCGCCCAGAGGTCAGGCCAAAGGCCTGCGACTCCAGTCTGTCCCCACGTGGGCGTGAACACAGCGACTCAGAACTGACGTGTGGAGCGTTCCAGCATCAATTCCACGCCTTCACGGTGCTGGATGAAGAGTGGCTCTCTGACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023933-'36-45,'36-43,38-45=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.850 A=0.923 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000042743fB6201
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAAGTGAGCCAGCATTTT
R:
CTGGAGTCGCAGGCCTTTG
Band lengths:
176-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]