GgaEX6015422 @ galGal3
Exon Skipping
Gene
ENSGALG00000002364 | SEC16A
Description
NA
Coordinates
chr17:8560250-8562161:+
Coord C1 exon
chr17:8560250-8560309
Coord A exon
chr17:8561164-8561238
Coord C2 exon
chr17:8561617-8562161
Length
75 bp
Sequences
Splice sites
3' ss Seq
CGGTGTCATCTCCTTTCTAGCCT
3' ss Score
7.86
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CTTTCGCGCTCTAGTTCAATGAGTTCATTATCACGTGAAGTAAGCCAGCATTTTAATCAG
Seq A exon
CCTGCCCCTGTGCCGCCTTCAGGGGAACCGTCAGCAGGAACAGTACAGTTCTACAACCCTTCTCAATTTGCACAA
Seq C2 exon
TCTCCTGCAGTCACTGGAAGTTCAAGGCCAGGAAGAATTGGGCAGAGAAAGTATCCGACACTGAAGTAGTATGTGATGGCTTTGTTTGGAGTTCTCATTCACGTTCTGGGTATATGAAGAACTGCTCAATCTTACAGCACGTGGTATCAGAGCTGCAGGTGACATGACAGTAATTGAATGATGGATGATTTCTTTCTTCATGGGTCTCCCTGCTTGCACCTCATCTACATAAATCATTACCAAACGTGGAATATATGTAACTCTTCCTTTTAAAGAACTGGCTAGGAATAGCTTTGCTGTGATAAAGAATAGACACGAGAGAGGAAATAGATGTTGTCTGTTACAAAAACTATCCATAAATTGCAGAGGCAATTTATTCCTTGAAATTATTTTAAACCCTCTAGTGGGACTTCTGGAGACATAGTTTCAGGGATTCTTTAATTTCTGAAGGATGCTCCCCCCCCCGCGGGGGGAAAACATGTCCACATTGTAACGTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002364-'33-38,'33-37,34-38=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGTGAAGTAAGCCAGCAT
R:
GCTCTGATACCACGTGCTGTA
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]