RnoEX0078968 @ rn6
Exon Skipping
Gene
ENSRNOG00000019122 | Sec16a
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:RGD Symbol;Acc:2322350]
Coordinates
chr3:3856218-3861617:-
Coord C1 exon
chr3:3861540-3861617
Coord A exon
chr3:3859885-3859962
Coord C2 exon
chr3:3856218-3857743
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTCTCTGTTTCACAGGCT
3' ss Score
10.67
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGGTAAGCTCTACAGTATCAGCCCCTGGGCCTGAACTCTCACCCTCCAAACCAGCAGATGGCTCCCAGGGAGGAGAG
Seq A exon
GCTCCTGGAGACCACTGTCCTGCAGGGGCCACTCCTGGTGGGTCTGTGCCCTTTTACAACCCTGCGCAGTTGGTGCAG
Seq C2 exon
GCGTCTGTCACCTCGGGGACTTCAAGGCCAGGAAGGATTGGCCAAAGAAAATATGCGGCACTGAACTAGGATTGCTGCTGGATTCTTACTTGGCACCCTGAGAGGATTCGATAACTGTTCTTCAACAAGAACCAAACTAGCTGCCTCAGGTCCTGCGGATCCCAGATGGGCGTGGCAGCACTCAGAGCCGGTCATACTGTGTGTCTCCCTCCTTGCAGCCTATGTATATGAATTATTGAAAAATCAATTTCAAGGTTTCTTTCAGATGCTGGATAGAATGAATCTAATTCAAAGTCTTTTATGTAAAAGAACGGTGTTTCTTTTTTAGTTACTTTAGACAAATTAAGGTTTGAGTCACTTGAGAAAACCCCTGAAGAGAGGCTAGACAGGGCTTCACTACAGGAGAGCACAGTTCCTTGGAAACCAGGGCCTCTCTCACCTGAGAAATGGTGCAGACCAACCAGGGCCCCTTAGGTTGCTGAGAGAAGAGTGACTACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019122-'40-48,'40-47,44-48
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.985
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACAGTATCAGCCCCTGGG
R:
AATCCTCTCAGGGTGCCAAGT
Band lengths:
177-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]