DreEX0066321 @ danRer10
Exon Skipping
Gene
ENSDARG00000063300 | si:ch1073-385i9.2
Description
si:ch1073-385i9.2 [Source:ZFIN;Acc:ZDB-GENE-131127-512]
Coordinates
chr16:52039524-52045762:-
Coord C1 exon
chr16:52045706-52045762
Coord A exon
chr16:52044859-52044936
Coord C2 exon
chr16:52039524-52040412
Length
78 bp
Sequences
Splice sites
3' ss Seq
CCGCTAATGTGTCCTCATAGGCT
3' ss Score
8.36
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATGTTTAATCCGAATGCTGCTTTGCCTCCCGGCCCGGAGGGAACCCAGTCTGGAGAG
Seq A exon
GCTCCTGCTCAACAACCAGTGCAAGGAGCTCCGCCTGCAGGGGGTGTGACCTTTTATAACCCCTCCCAGTTTGCACAG
Seq C2 exon
TCTGTTCCCACAAACCGTACTCGCCCTGGGCGCCTGGGACAGAGAGGATACCCAACACCGAAGTAACAGTACCGCTGTAGTTCTAGATCAGACTGTGGTTCTAGATCATGAAGTTCGGACTCCTGGAAGCGCTGGCATGTGGCCATCCAAACCCTTCAAATAACACTGTCATAATCGATGTTTGCAATTGGACGAGACTCTGTTTCTCCATACGGCCTGTGTGTTGTGTGTACGGACCGGGCGGCGCTTCCTCAACATGAGCAGTGTGAATTAAAAGTGCAATATTGCGATTTTTAGCCCTGTGTAGATTGATTTCGCTAGTGTAGTCTGCTCATTTCAGCAGGATGTCTGCAAGTGTGTATGAGCGCATGTGCGTTTGGAGGAAACGTGGCCGTGTCCTGCTAACGGAAAGCATGAGTTTGAGGGCGGACAGGCCTGTTATCATGGGAACAGTGCAGCGTACCAGAATGTTTTAGATATTTATTAAGCTTCCTGTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063300_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCGAATGCTGCTTTGCCT
R:
GCTTCCAGGAGTCCGAACTTC
Band lengths:
181-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]