GgaEX6015422 @ galGal4
Exon Skipping
Gene
ENSGALG00000002364 | SEC16A
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr17:7871154-7872589:+
Coord C1 exon
chr17:7871154-7871213
Coord A exon
chr17:7872068-7872142
Coord C2 exon
chr17:7872521-7872589
Length
75 bp
Sequences
Splice sites
3' ss Seq
CGGTGTCATCTCCTTTCTAGCCT
3' ss Score
7.86
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CTTTCGCGCTCTAGTTCAATGAGTTCATTATCACGTGAAGTAAGCCAGCATTTTAATCAG
Seq A exon
CCTGCCCCTGTGCCGCCTTCAGGGGAACCGTCAGCAGGAACAGTACAGTTCTACAACCCTTCTCAATTTGCACAA
Seq C2 exon
TCTCCTGCAGTCACTGGAAGTTCAAGGCCAGGAAGAATTGGGCAGAGAAAGTATCCGACACTGAAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002364-'37-47,'37-46,39-47=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCGCGCTCTAGTTCAATGA
R:
ACTTCAGTGTCGGATACTTTCTCTG
Band lengths:
127-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]