BtaEX6051102 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000034140 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:12754540-12795386:-
Coord C1 exon
chr10:12795174-12795386
Coord A exon
chr10:12787416-12787590
Coord C2 exon
chr10:12754540-12754660
Length
175 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTCTCATCTATTCAGCTG
3' ss Score
9.02
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTGCCAGGAGGAATGCCCCTTGGGGACCTTCGGCTTCCAATGCTCCCAGCGCTGTGACTGCCACAATGGAGGTCAGTGTTCACCCACGTCCGGCGCCTGCGAGTGTGAACCTGGCTACAAAGGCCCCCGCTGCCAGGAGCGGCTGTGCCCTGAGGGCCTGCACGGCCCAGGCTGCAGCTTGCCCTGCCCCTGCGATGCTGACAACACCATTAG
Seq A exon
CTGCCACCCCGTGACTGGAGCTTGCACCTGCCAGCCAGGGTGGTCTGGCTACCACTGCAATGAGTCCTGCCCTGTTGGCTACTATGGTGATGGCTGCCAGCTGCCTTGCACCTGTCAGAACGGTGCCGACTGCCACAGCATCACTGGGAGCTGCACTTGTGCCCCAGGCTTCATG
Seq C2 exon
GGGGAGGTCTGTGCAGCTCCCTGTGCGGTGGGGACCTATGGCTCCAACTGCTCGTCTGTCTGTAGCTGTAACAACGGTGGCACCTGCTCCCCAGTTGATGGCTCCTGCACCTGCAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034140-'5-7,'5-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(43.5=27.8),PF126612=hEGF=WD(100=18.1),PF0005319=Laminin_EGF=PU(18.8=12.5)
A:
PF0005319=Laminin_EGF=PD(79.2=64.4)
C2:
PF079748=EGF_2=PU(77.4=58.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACTGCCACAATGGAGGTC
R:
TGCCACCGTTGTTACAGCTAC
Band lengths:
242-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]