RnoEX6036180 @ rn6
Exon Skipping
Gene
ENSRNOG00000010634 | Megf11
Description
multiple EGF-like-domains 11 [Source:RGD Symbol;Acc:1582797]
Coordinates
chr8:70129478-70157012:+
Coord C1 exon
chr8:70129478-70129690
Coord A exon
chr8:70136462-70136636
Coord C2 exon
chr8:70156892-70157012
Length
175 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTGTCCTCTGTTCAGCTG
3' ss Score
9.01
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTGCCAAGAAGAATGTCCCTTTGGAACTTTCGGTTTCCGGTGCTCTCAGCGCTGTGACTGCCACAATGGAGGTCAATGTTCACCAGCCACAGGTGCCTGTGAGTGTGAACCTGGCTACAAGGGCCCTAGCTGCCAGGAACGGCTATGCCCCGAGGGCCTGCATGGCCCAGGCTGCACCTCGCCCTGTCCCTGTGACACTGAGAACACTATCAG
Seq A exon
CTGCCATCCAGTCACTGGAGCTTGTACCTGCCAGCCAGGCTGGTCTGGCCACTACTGCAATGAGTCCTGCCCTGCCGGCTACTATGGCAATGGTTGCCAGCTACCCTGCACCTGCCAGAACGGCGCTGACTGCCACAGCATCACTGGGAGCTGCACTTGTGCTCCAGGATTCATG
Seq C2 exon
GGAGAGGTGTGTGCCGTTCCCTGTGCAGCAGGGACCTATGGTCCCAACTGTTCATCTGTATGTAGCTGTAGCAATGGCGGCACCTGCTCCCCTGTGGATGGCTCCTGCACCTGCCGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010634-'18-22,'18-21,19-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(3.2=1.4),PF079748=EGF_2=WD(100=43.1),PF0005319=Laminin_EGF=PU(18.8=12.5)
A:
PF0005319=Laminin_EGF=PD(79.2=64.4)
C2:
PF079748=EGF_2=PU(77.4=58.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCAGCGCTGTGACTGC
R:
CCGCCATTGCTACAGCTACAT
Band lengths:
251-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]