MmuEX6066641 @ mm9
Exon Skipping
Gene
ENSMUSG00000036466 | Megf11
Description
multiple EGF-like-domains 11 [Source:MGI Symbol;Acc:MGI:1920951]
Coordinates
chr9:64500877-64527106:+
Coord C1 exon
chr9:64500877-64501089
Coord A exon
chr9:64508147-64508321
Coord C2 exon
chr9:64526986-64527106
Length
175 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTGTCCTCTATTCAGCTG
3' ss Score
9.59
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTGTCAAGAAGAATGTCCCTTTGGAACGTTCGGTTTCCTGTGCTCTCAACGCTGTGACTGCCACAATGGAGGTCAATGTTCACCAGCCACAGGGGCCTGTGAGTGTGAGCCTGGCTACAAGGGCCCTAGCTGCCAGGAGCGGCTATGCCCTGAGGGCCTGCATGGCCCAGGCTGCACCTTGCCCTGCCCCTGTGACACCGAGAACACTATCAG
Seq A exon
CTGCCATCCAGTTACTGGAGCTTGTACCTGCCAACCAGGCTGGTCTGGCCACTACTGCAATGAGTCCTGCCCCGCCGGCTACTATGGCAACGGTTGCCAGCTACCCTGCACCTGCCAGAACGGTGCTGACTGCCACAGTATCACCGGGAGCTGCACTTGTGCTCCAGGCTTCATG
Seq C2 exon
GGAGAGGTGTGTGCCGTCCCCTGTGCTGCAGGGACCTATGGTCCCAACTGTTCATCTGTATGTAGCTGTAGCAACGGCGGCACCTGTTCCCCAGTGGATGGCTCCTGCACCTGCCGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036466-'15-15,'15-13,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(39.5=23.6),PF079748=EGF_2=WD(100=43.1),PF0005319=Laminin_EGF=PU(18.8=12.5)
A:
PF0005319=Laminin_EGF=PD(79.2=64.4)
C2:
PF126612=hEGF=PD(30.8=9.8),PF079748=EGF_2=PU(74.2=56.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCTCAACGCTGTGACTG
R:
CGCCGTTGCTACAGCTACATA
Band lengths:
253-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: