GgaEX6008286 @ galGal4
Exon Skipping
Gene
ENSGALG00000007631 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:17715482-17742776:-
Coord C1 exon
chr10:17742564-17742776
Coord A exon
chr10:17735115-17735289
Coord C2 exon
chr10:17715482-17715602
Length
175 bp
Sequences
Splice sites
3' ss Seq
TGTCTGCCTGTCTTCCCTAGTTG
3' ss Score
10.34
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTGTCAAGAAGAGTGTCCAATTGGGACATTTGGCTTTCAGTGCACACAAAGATGTGACTGCCAAAACGGTGCAAAGTGTTACCATGTGAATGGAGCGTGTATGTGTGACCCAGGGTTTAAAGGGATTCACTGTCAAGAAAGAATGTGTCCGGAAGGGTTTTATGGCCTCAAATGCAACAAGAGATGCCCCTGCAATATTACCAACACCCTCAG
Seq A exon
TTGCCATCCATTGTCTGGAGAATGTAGCTGCAAAGCTGGCTGGGCTGGACTGTACTGCAATGAGACCTGTCCCCCTGGGTACTACGGCGAGGGCTGCCAGCTGACCTGCTCCTGTGAGAATGGTGCAGATTGCGACAGCATCACTGGGAAGTGTATGTGTGCACCAGGATACATG
Seq C2 exon
GGAGACGACTGCACCATTACCTGCATGGCAGGAACCTATGGCACCAATTGCTCATCAGTTTGTAATTGCAAAAATGATGGTGCGTGTTCCCCCGTGGACGGTCTGTGCATTTGCAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631-'10-18,'10-14,11-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(43.5=27.8),PF126612=hEGF=WD(100=18.1),PF0005319=Laminin_EGF=PU(21.3=13.9)
A:
PF0005319=Laminin_EGF=PD(73.1=64.4),PF0005319=Laminin_EGF=PU(51.2=37.3)
C2:
PF0005319=Laminin_EGF=PD(40.4=46.3),PF126612=hEGF=PU(46.2=14.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAAACGGTGCAAAGTGTT
R:
GGGGAACACGCACCATCATTT
Band lengths:
246-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]