GgaEX6008286 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:20376736-20404030:-
Coord C1 exon
chr10:20403818-20404030
Coord A exon
chr10:20396369-20396543
Coord C2 exon
chr10:20376736-20376856
Length
175 bp
Sequences
Splice sites
3' ss Seq
TGTCTGCCTGTCTTCCCTAGTTG
3' ss Score
10.34
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTGTCAAGAAGAGTGTCCAATTGGGACATTTGGCTTTCAGTGCACACAAAGATGTGACTGCCAAAACGGTGCAAAGTGTTACCATGTGAATGGAGCGTGTATGTGTGACCCAGGGTTTAAAGGGATTCACTGTCAAGAAAGAATGTGTCCGGAAGGGTTTTATGGCCTCAAATGCAACAAGAGATGCCCCTGCAATATTACCAACACCCTCAG
Seq A exon
TTGCCATCCATTGTCTGGAGAATGTAGCTGCAAAGCTGGCTGGGCTGGACTGTACTGCAATGAGACCTGTCCCCCTGGGTACTACGGCGAGGGCTGCCAGCTGACCTGCTCCTGTGAGAATGGTGCAGATTGCGACAGCATCACTGGGAAGTGTATGTGTGCACCAGGATACATG
Seq C2 exon
GGAGACGACTGCACCATTACCTGCATGGCAGGAACCTATGGCACCAATTGCTCATCAGTTTGTAATTGCAAAAATGATGGTGCGTGTTCCCCCGTGGACGGTCTGTGCATTTGCAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631-'3-5,'3-3,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(43.5=27.8),PF126612=hEGF=WD(100=18.1),PF0005319=Laminin_EGF=PU(21.3=13.9)
A:
PF0005319=Laminin_EGF=PD(76.6=61.0),PF0005319=Laminin_EGF=PU(55.3=44.1)
C2:
PF0005319=Laminin_EGF=PD(40.4=46.3),PF126612=hEGF=PU(46.2=14.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAAACGGTGCAAAGTGTT
R:
GGGGAACACGCACCATCATTT
Band lengths:
246-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]