BtaEX6052765 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008868 | CAPN3
Description
Bos taurus calpain 3, (p94) (CAPN3), mRNA. [Source:RefSeq mRNA;Acc:NM_174260]
Coordinates
chr10:37867602-37872921:+
Coord C1 exon
chr10:37867602-37867687
Coord A exon
chr10:37869854-37869931
Coord C2 exon
chr10:37872761-37872921
Length
78 bp
Sequences
Splice sites
3' ss Seq
CACCTCCATCATCCCTCCAGCTG
3' ss Score
7.65
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCCCTGTACAAGGGTGAGAAAGTGAAGCTGGTGCGGCTGCGGAACCCCTGGGGCCAGGTGGAGTGGAATGGCTCCTGGAGTGACAG
Seq A exon
CTGGAAGGACTGGAGCTATGTGGACAAGGACGAGAAGGCCCGTTTGCAGCACCAGGTCACTGAGGATGGAGAGTTCTG
Seq C2 exon
GATGTCCTACGATGATTTTATCTACCATTTCACAAAGCTGGAGATCTGCAACCTCACAGCTGATGCCCTGGAGTCCGACAAGCTTCAGACTTGGACAGTGTCCGTGAATGAGGGCCGCTGGGTGAGGGGCTGCTCTGCCGGAGGCTGCCGCAACTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008868-'14-13,'14-11,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(18.9=100)
A:
PF0064816=Peptidase_C2=FE(17.6=100)
C2:
PF0064816=Peptidase_C2=PD(12.8=34.5),PF0106717=Calpain_III=PU(15.5=43.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAAAGTGAAGCTGGTGCG
R:
TCCAAGTCTGAAGCTTGTCGG
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]