GgaEX6038022 @ galGal4
Exon Skipping
Gene
ENSGALG00000009050 | CAPN3
Description
calpain-3 [Source:RefSeq peptide;Acc:NP_001004405]
Coordinates
chr5:24949147-24950368:+
Coord C1 exon
chr5:24949147-24949232
Coord A exon
chr5:24949690-24949767
Coord C2 exon
chr5:24950208-24950368
Length
78 bp
Sequences
Splice sites
3' ss Seq
GCTTGTTTACACTTTTGCAGATC
3' ss Score
8.95
5' ss Seq
CTGGTGAAT
5' ss Score
3.53
Exon sequences
Seq C1 exon
ACAACATATAAAGGGGAAAAGATGCGTCTGGTAAGGCTGAGAAACCCGTGGGGACAGGTGGAATGGAATGGACCTTGGAGTGATAA
Seq A exon
ATCAGAAGAGTGGAACTTCATTGATGAAGAAGAGAAAACCCGCCTGCAACACAAGATTGCAGAAGATGGGGAATTCTG
Seq C2 exon
GATATCATTTGAAGATTTCATGAGGCATTTCACAAAACTTGAGATCTGTAACCTCACACCTGATACTCTGGAAGCTGATAAGCTTCAGACCTGGACTGTGTCAGTCAACGAAGGACGCTGGGTGAGAGGCTGCTCAGCTGGAGGGTGCCGCAATTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009050-'9-13,'9-12,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.2=100)
A:
PF0064816=Peptidase_C2=FE(7.6=100)
C2:
PF0064816=Peptidase_C2=PD(5.5=34.5),PF0106717=Calpain_III=PU(15.5=43.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCGTCTGGTAAGGCTGAG
R:
ACACAGTCCAGGTCTGAAGCT
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]