DreEX6056044 @ danRer10
Exon Skipping
Gene
ENSDARG00000041864 | capn3a
Description
calpain 3a, (p94) [Source:ZFIN;Acc:ZDB-GENE-040912-97]
Coordinates
chr17:45336554-45339809:+
Coord C1 exon
chr17:45336554-45336648
Coord A exon
chr17:45339480-45339557
Coord C2 exon
chr17:45339649-45339809
Length
78 bp
Sequences
Splice sites
3' ss Seq
GAGCTGTTTTATTGTTACAGTTC
3' ss Score
6.66
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
TGTAAACAGAGCCAGCAGAAGGAGTCTAGAGTGCGTCTGGTGCGTTTGCGTAACCCCTGGGGTCAAGTAGAGTGGAATGGACCATGGAGTGACAA
Seq A exon
TTCTAAAGAATGGGAAAGTCTTTCTAAAGCGGAAAAAGAGAAACTCCAGCAACAGAACGCTGAAGATGGAGAGTTTTG
Seq C2 exon
GATGTCGTTTGAAGATTTTAAGAAAAATTACACCAAAATTGAGATTTGTAACTTGACACCTGATGCCCTGGAGGACGATAAGCTACATAAGTGGACAGTGTCTGTCAATGAGGGCCGCTGGGTGAGAGGCTGCTCTGCCGGAGGATGCAGAAACTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041864-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.370 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(10.2=100)
A:
PF0064816=Peptidase_C2=FE(15.9=100)
C2:
PF0064816=Peptidase_C2=PD(11.6=34.5),PF0106717=Calpain_III=PU(15.5=43.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGAGCCAGCAGAAGGAGT
R:
TAGCTTATCGTCCTCCAGGGC
Band lengths:
176-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]