BtaEX6054935 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011680 | PAPLN
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:HGNC Symbol;Acc:HGNC:19262]
Coordinates
chr10:85103775-85105741:+
Coord C1 exon
chr10:85103775-85103901
Coord A exon
chr10:85104873-85105080
Coord C2 exon
chr10:85105559-85105741
Length
208 bp
Sequences
Splice sites
3' ss Seq
GCGCTCCTGCTCCCCACCAGCTG
3' ss Score
6.3
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTCAGCAGACTCGCCGGGTGTTCTGCACCATGGATAACGAGGTCTACCCTGAGCACCTGTGCCAGCCCCAGTCGCGGCCAGCTGACCGCCGCCCCTGCAGCCTGCAGCCCTGCCCACACACCAAGCG
Seq A exon
CTGGAAGACGGGGCCCTGGACGCTCTGCTCGGCCTCCTGTGGGGGCGGCTCCCAGTCCCGCTCCGTCTACTGTGTCTTGTCTGATGGGGCCAGTGCCCAGGAGGCTGCTGAGGATGCTGAGTGCGAGGGTCTGCCTGAGAAGCCCCCGGGCACGCGGGCCTGCAACCTGCAGCGCTGCGCAGGCTGGAGCGTGGAGCCCTGGAGCGAG
Seq C2 exon
TGCTCTGTCAGCTGTGGTGCGGGGGTCCGGAGGCGGAGTGTCACCTGCCGGGGTGACGAGGGGTCTCGGCTCCACGCCACGGCCTGCTCCTTGGAGGACCGTCCGCCTCTCACTGAGCCCTGTGTGCATGACGACTGTCCCCCGCTCAGTGACCAGGCCTGGCACGTGGGCGCCTGGGGTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011680-'12-18,'12-15,14-18=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.114 C2=0.082
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(69.8=86.0)
A:
PF0009014=TSP_1=WD(100=84.3),PF0009014=TSP_1=PU(13.0=10.0)
C2:
PF0009014=TSP_1=PD(83.3=73.8)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACTCGCCGGGTGTTCT
R:
CCAGGCCTGGTCACTGAGC
Band lengths:
284-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]