RnoEX6029290 @ rn6
Exon Skipping
Gene
ENSRNOG00000009448 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:RGD Symbol;Acc:1311176]
Coordinates
chr6:107259322-107261423:+
Coord C1 exon
chr6:107259322-107259448
Coord A exon
chr6:107260343-107260550
Coord C2 exon
chr6:107261241-107261423
Length
208 bp
Sequences
Splice sites
3' ss Seq
CCCTTTTTCTTTTTTGTCAGCTG
3' ss Score
8.79
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTCACCAGTCCCGCCTGGTATTCTGCACCATCGACAACGAGGCCTATCCGGACCACATGTGCCAACACCAGCCTCGGCCAGCCCACCGACGTTCATGTAACACTCACCCTTGTCCAAAGACCAAGCG
Seq A exon
CTGGAAAGTAGGACCATGGACGCCCTGCTCAGTCTCCTGTGGGGGTGGATTCCAGTCTCGCTCTGTCTACTGCGTGTCCTCAGATGGCACTGGTGGCCAGGAAGCTGCTGAGGAGACCCAGTGTGCTGGCCTAGCTGGGAAACCCCCTACCACACAGGCATGCAACCTGCAGCGCTGTGCAGTCTGGAGCGTGGAGCCCTGGGGAGAG
Seq C2 exon
TGCTCAGTTACATGTGGAGCTGGCATCAGGAAGCGGAGTGTCACATGCCGAGGGGACGAAGACTCTCTGGTCCACCCCGCAGCATGCTCCTTGAAGGACCAGCCAACCCTCACAGAGCCCTGTGTGCGAGAGGCCTGTCCTGGGTTCCGTGGCCAGGCCTGGCATGTCGGCTCGTGGAGTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009448-'15-15,'15-14,17-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.076 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=WD(100=82.9),PF0009014=TSP_1=PU(13.0=10.0)
C2:
PF0009014=TSP_1=PD(83.3=73.8),PF0009014=TSP_1=PU(12.0=9.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGTATTCTGCACCATCG
R:
TAGACTCCACGAGCCGACATG
Band lengths:
298-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]