GgaEX1041980 @ galGal3
Exon Skipping
Gene
ENSGALG00000009315 | PAPLN
Description
NA
Coordinates
chr5:28490793-28495673:-
Coord C1 exon
chr5:28495547-28495673
Coord A exon
chr5:28492661-28492868
Coord C2 exon
chr5:28490793-28490969
Length
208 bp
Sequences
Splice sites
3' ss Seq
CTTGATTCTGTGACCTGCAGGTG
3' ss Score
8.47
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCTTCCAAACCCGCTTGGTGTTTTGTACCATAGACAATGAAATTTATCCAGACTATATGTGCAAGAACAAACCACAACCAGACAATAACCGGACATGTGGCCATCAGACTTGTCCCCAGACAAAACG
Seq A exon
GTGGAAAACAGGGGAGTGGGGACCCTGCTCAGCTACCTGTGGTGGAGGCACCCAGACTCGCTCTGTTTACTGTGTAGCATTTGATGGTCAGAACTCCCAAGGTGTTGTGGACAACGCTGAGTGTATGGCCTTTGCACAGCAGCCTCACAGCAGTCAGCCCTGCAACAGGAGACAGTGTGCAACCTGGAGCACAGGGCCCTGGTCAGAG
Seq C2 exon
TGCTCAGCCAGCTGTGGGGAAGGCGTCCAGACCCGGACTGTCACCTGCAGAACGCAGCATGGCTCTCAGGCTCAGGACTTTGCTTGCTTAATGGAGCCAAAGCCACCAGCCACGCAGCCCTGCCTTAAGGAGAACTGCATCCAAGAAGTCGGTTGGCACGTTGGAGACTGGGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009315-'10-11,'10-10,12-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(71.2=86.0)
A:
PF0009014=TSP_1=WD(100=84.3),PF0009014=TSP_1=PU(13.0=10.0)
C2:
PF0009014=TSP_1=PD(83.3=76.3),PF0009014=TSP_1=PU(10.9=10.2)

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCTTGGTGTTTTGTACCA
R:
AGGCCCCAGTCTCCAACG
Band lengths:
294-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]