DreEX6056385 @ danRer10
Exon Skipping
Gene
ENSDARG00000027867 | paplna
Description
papilin a, proteoglycan-like sulfated glycoprotein [Source:ZFIN;Acc:ZDB-GENE-070815-4]
Coordinates
chr17:51068973-51080998:-
Coord C1 exon
chr17:51080927-51080998
Coord A exon
chr17:51069394-51069598
Coord C2 exon
chr17:51068973-51069149
Length
205 bp
Sequences
Splice sites
3' ss Seq
GTCCTTGTTGTGTGTGTCAGCTG
3' ss Score
7.57
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GATGGCGTATGTGTACGAGGCGCAGTTGTGGAGGCCCACGGAAACACCACGAGTCTATGTACAAGTGTACAG
Seq A exon
CTGGACGGCTGGCGAGTGGAGCCCATGTCCGGTGACCTGTGGTGGGGGTCTTCAGGCCAGGAGAGTGGAGTGTATGTCACATGACTCCACAGGATCACGATTGGTTGAGGACTCTCAGTGTACTGCTTACACTCCCAGACCTCTCAGCCAGCAGAACTGCAACATGCAGAAATGTGCTCAGTACAGCATTTACAGCTGGAGCCAG
Seq C2 exon
TGCTCTGTGACATGCGGCTCTGGGAAACAGACGCGAGATGTGGTGTGCATTGGTTCAGACGGAGCTTCTGTGGAGGATTACGCATGTGGGAACCAACCAAAGCCCCCCAGAGAACAGATCTGCGAGATGCCCATGTGCAGGAGCCCCATTGCCTGGCATATAGGAGACTGGGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027867-'16-17,'16-16,18-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=WD(100=84.1),PF0009014=TSP_1=PU(9.6=7.2)
C2:
PF0009014=TSP_1=PD(86.5=76.3),PF0009014=TSP_1=PU(11.3=10.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGTGTACGAGGCGCAGTT
R:
GCCCCAGTCTCCTATATGCCA
Band lengths:
240-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]