Special

GgaEX1041980 @ galGal4

Exon Skipping

Gene
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:HGNC Symbol;Acc:HGNC:19262]
Coordinates
chr5:25604291-25609171:-
Coord C1 exon
chr5:25609045-25609171
Coord A exon
chr5:25606159-25606366
Coord C2 exon
chr5:25604291-25604467
Length
208 bp
Sequences
Splice sites
3' ss Seq
CTTGATTCTGTGACCTGCAGGTG
3' ss Score
8.47
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCTTCCAAACCCGCTTGGTGTTTTGTACCATAGACAATGAAATTTATCCAGACTATATGTGCAGGAACAAACCACAACCAGACAATAACCGGACATGTGGCCATCAGACTTGTCCCCAGACAAAACG
Seq A exon
GTGGAAAACAGGGGAGTGGGGACCCTGCTCAGCTACCTGTGGTGGAGGCACCCAGACTCGCTCTGTTTACTGTGTAGCATTTGATGGTCAGAACTCCCAAGGTGTTGTGGACAACGCTGAGTGTATGGCCTTTGCACAGCAGCCTCACAGCAGTCAGCCCTGCAACAGGAGACAGTGTGCAACCTGGAGCACAGGGCCCTGGTCAGAG
Seq C2 exon
TGCTCAGCCAGCTGTGGGGAAGGCGTCCAGACCCGGACTGTCACCTGCAGAACGCAGCATGGCTCTCAGGCTCAGGACTTTGCTTGCTTAATGGAGCCAAAGCCACCAGCCACGCAGCCCTGCCTTAAGGAGAACTGCATCCAAGAAGTCGGTTGGCACGTTGGAGACTGGGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009315_MULTIEX2-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.070 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0009014=TSP_1=PD(71.2=86.0)
A:
PF0009014=TSP_1=WD(100=84.3),PF0009014=TSP_1=PU(13.0=10.0)
C2:
PF0009014=TSP_1=PD(83.3=76.3),PF0009014=TSP_1=PU(10.9=10.2)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCTTGGTGTTTTGTACCA
R:
AGGCCCCAGTCTCCAACG
Band lengths:
294-502
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]