MmuEX6082007 @ mm9
Exon Skipping
Gene
ENSMUSG00000021223 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:MGI Symbol;Acc:MGI:2386139]
Coordinates
chr12:85116293-85118152:+
Coord C1 exon
chr12:85116293-85116419
Coord A exon
chr12:85117304-85117511
Coord C2 exon
chr12:85117970-85118152
Length
208 bp
Sequences
Splice sites
3' ss Seq
CCACCTTCTTTTTTGGTCAGCTG
3' ss Score
6.06
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTCACCAGTCCCGCCTGGTATTCTGCACTATTGACAACGAGGCCTATCCAGACCACATGTGCCAACACCAGCCTCGGCCCACCCACCGACGTTCATGCAACACTCAACCTTGTCCGAAGACCAAGCG
Seq A exon
CTGGAAGGTAGGCCCATGGACGCCCTGCTCGGTCTCCTGCGGGGGTGGAGTCCAGTCTCGCTCTGTCTACTGCATATCCTCAGATGGGACTGGTGGCCAGGAAGCTGCTGAGGAGACCCAGTGTGCTGGCCTAGTTGGGAAACCCCCTACCACACAGGCTTGCAACCTGCAGCACTGTGCAGTCTGGAGCGTGGAGCCCTGGGGAGAG
Seq C2 exon
TGCTCAGTTACATGCGGGACTGGCATCAGGAAGAGGAGTGTCACCTGCCGAGGGGACGAGGGGTCTCCGGTCCATGCTGCAGCGTGCTTGTTGAAGGACCAGCCAACCCTCACGGAGCCCTGTGTACAAGAGGCCTGCCCTGTGTTCCGTGGCCAGGCCTGGCATGTTGGCTCATGGAGTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021223-'10-12,'10-11,12-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=WD(100=82.9),PF0009014=TSP_1=PU(13.0=10.0)
C2:
PF0009014=TSP_1=PD(83.3=73.8),PF0009014=TSP_1=PU(12.0=9.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCCTGGTATTCTGCACTA
R:
AGACTCCATGAGCCAACATGC
Band lengths:
300-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: