BtaEX6056496 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025428 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr12:33473227-33478590:+
Coord C1 exon
chr12:33473227-33473267
Coord A exon
chr12:33474874-33474947
Coord C2 exon
chr12:33478521-33478590
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCCTGGTTTAAAAGGTT
3' ss Score
7.89
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
TGTTAAGACAGAATGCATGGCAAATGATTCTGTGGAAAGAG
Seq A exon
GTTAATGTTGGTGACATTGTGAAGGCCACCAATGGGCAGTTCCTTCCTGCAGACATGGTCCTGATTTCTTCCAG
Seq C2 exon
TGAACCTCAGGCAACATGTTTTGTTGCAACATCTAATCTGGATGGAGAGACGAATCTAAAAATACGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025428-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(4.7=100)
A:
PF0012215=E1-E2_ATPase=FE(8.7=100)
C2:
PF0012215=E1-E2_ATPase=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAAGACAGAATGCATGGCA
R:
CTGCCGTATTTTTAGATTCGTCTCT
Band lengths:
111-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]