BtaEX6061400 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011922 | PLEC
Description
plectin [Source:HGNC Symbol;Acc:HGNC:9069]
Coordinates
chr14:2076785-2077558:+
Coord C1 exon
chr14:2076785-2077141
Coord A exon
chr14:2077217-2077300
Coord C2 exon
chr14:2077454-2077558
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGACCACCCTGACGCCCCAGGCC
3' ss Score
5.97
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AAGCTGCGGGCCCAGGCGGAGGCACAGCAGCCTGTGTTCGATGCCCTGCGGGATGAGCTGCGGGGGGCACAGGAGGTGGGCGAGCGGCTGCAGCAGCGGCACGGCGAGCGGGACGTGGAGGTGGAGCGCTGGCGTGAGCGGGTCACCCAACTGCTGGAGCGCTGGCAGGCCGTGCTGGCCCAGACCGACGTGCGGCAGCGTGAGCTTGAGCAGCTGGGCCGCCAGCTGCGCTACTACCGGGAGAGCGCAGACCCGCTGGGCGCCTGGCTGCAGGACGCCAGGCGGCGGCAGGAGCAGATCCAGGCCGTGCCGCTGGCCGACAGCCAGGCTGTGCGCGAGCAGCTGCGGCAGGAGAAG
Seq A exon
GCCCTGCTGGAAGAGATTGAACGCCATGCTGAAAAGGTAGAGGAGTGCCAGAGGTTCGCGAAGCAGTACATCAACGCCATCAAG
Seq C2 exon
GACTACGAGCTTCAGCTGGTCACGTACAAGGCACAGCTGGAGCCAGTGGCCTCGCCGGCCAAGAAGCCCAAGGTCCAGTCGGGGTCCGAGAGCGTCATCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011922-'40-37,'40-36,41-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.084 A=0.000 C2=0.321
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(63.6=58.8),PF0043516=Spectrin=PU(34.9=37.8)
A:
PF0043516=Spectrin=FE(20.9=100)
C2:
PF0043516=Spectrin=FE(26.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGCTACTACCGGGAGAG
R:
CTGTGCCTTGTACGTGACCAG
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]