MmuEX6054406 @ mm9
Exon Skipping
Gene
ENSMUSG00000022565 | Plec
Description
plectin [Source:MGI Symbol;Acc:MGI:1277961]
Coordinates
chr15:76013521-76014309:-
Coord C1 exon
chr15:76013953-76014309
Coord A exon
chr15:76013792-76013875
Coord C2 exon
chr15:76013521-76013625
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTAACCCCTTCCTCCCTCAGGCC
3' ss Score
10.83
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AAGCTGCGGGCCCAGGCCGAGGCACAGCAGCCAGTATTCAACACCCTAAGAGATGAGTTGCGGGGGGCACAGGAGGTTGGTGAGCGGCTACAGCAGCGGCATGGTGAGCGGGACGTAGAAGTTGAGCGCTGGCGAGAACGTGTCACTCAGTTGCTGGAGCGCTGGCAGGCTGTTCTAGCCCAGACAGATGTGCGGCAGCGTGAGCTCGAGCAGCTGGGCCGCCAGCTTCGCTACTATCGTGAGAGCGCGGATCCTCTGAGCGCCTGGCTGCAGGATGCCAAGAGGCGGCAAGAGCAGATCCAGGCCGTGCCAATAGCCAACTGTCAGGCTGCGCGAGAACAGCTGCGCCAGGAGAAG
Seq A exon
GCCCTGCTGGAGGAGATTGAGCGTCATGGTGAGAAGGTTGAGGAGTGCCAGAAGTTTGCTAAGCAGTACATCAATGCAATCAAG
Seq C2 exon
GACTATGAGCTCCAGCTGATCACGTACAAGGCTCAGCTTGAACCCGTGGCCTCCCCTGCCAAGAAGCCCAAGGTTCAGTCTGGATCGGAGAGCGTCATCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022565-'45-44,'45-43,46-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.101 A=0.000 C2=0.250
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(64.2=58.8),PF0043516=Spectrin=PU(51.1=37.8)
A:
PF0043516=Spectrin=FE(30.7=100)
C2:
PF0043516=Spectrin=PD(14.8=37.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
ENSMUSP00000023226, ENSMUSP00000057158, ENSMUSP00000071765, ENSMUSP00000072478, ENSMUSP00000073124f1277A, ENSMUSP00000074383, ENSMUSP00000075693, ENSMUSP00000075772, ENSMUSP00000079668, ENSMUSP00000087037, ENSMUSP00000126068, ENSMUSP00000126526, ENSMUSP00000127261, ENSMUSP00000129543, ENSMUSP00000130048
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCTTCGCTACTATCGTG
R:
GCCTTGTACGTGATCAGCTGG
Band lengths:
169-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: