RnoEX6032777 @ rn6
Exon Skipping
Gene
ENSRNOG00000023781 | Plec
Description
plectin [Source:RGD Symbol;Acc:621649]
Coordinates
chr7:117242408-117243196:-
Coord C1 exon
chr7:117242840-117243196
Coord A exon
chr7:117242684-117242767
Coord C2 exon
chr7:117242408-117242512
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTAACCCCGTCCTCCCCCAGGCC
3' ss Score
10.06
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AAGCTGCGGGCCCAGGCGGAGGCACAGCAGCCTGTATTCAACACCCTACGAGATGAGCTGAGGGGGGCACAGGAAGTTGGTGAACGGCTACAGCAGCGGCATGGTGAGCGGGACGTGGAAGTAGAGCGCTGGCGAGAACGTGTCACTCAGTTGCTGGAGCGCTGGCAGGCTGTGCTAGCCCAGACTGATGTGCGGCAGCGGGAGCTTGAACAGCTGGGCCGCCAACTTCGCTACTACCGTGAAAGTGCGGATCCGCTGAGCTCCTGGCTGCAGGATGCCAAGAGCCGGCAAGAGCAGATCCAGGCTGTGCCAATAGCCAACAGTCAGGCTGCACGAGAACAGCTGCGCCAGGAGAAG
Seq A exon
GCCCTGCTGGAGGAGATTGAGCGCCATGGTGAGAAGGTTGAGGAGTGCCAGAAGTTTGCTAAGCAGTACATCAATGCAATCAAG
Seq C2 exon
GACTATGAGCTCCAGCTGATCACCTACAAGGCTCAGCTTGAACCTGTGGCCTCCCCCGCCAAGAAGCCCAAGGTTCAGTCTGGATCGGAGAGCGTCATCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023781-'41-54,'41-53,42-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.126 A=0.000 C2=0.314
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAGCAGATCCAGGCTGTG
R:
GATGACGCTCTCCGATCCAGA
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]