DreEX0056140 @ danRer10
Exon Skipping
Gene
ENSDARG00000062590 | pleca
Description
plectin a [Source:ZFIN;Acc:ZDB-GENE-030131-8984]
Coordinates
chr19:22839713-22842960:-
Coord C1 exon
chr19:22842604-22842960
Coord A exon
chr19:22839902-22839985
Coord C2 exon
chr19:22839713-22839817
Length
84 bp
Sequences
Splice sites
3' ss Seq
CATATTAATTCTCTTTACAGAAA
3' ss Score
8.57
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
AAGCTGCGCTCAGAAGCAGAAGGCAAGCAAGCCACATTTGACCGTCTGGAAGAGGAGCTTCAGAGAGCAACAGAAGTGAACAAGCGGATGTCTCAGCTGCACAGCGAGCGGGATGTGGAGCTGGAGCACTACAGGCAGCTGGTGGGCAACCTGAGGGAGCGCTGGCAAGCTGTGTTTGCTCAGATTGAGCTGAGGCAGCGAGAGCTTGATCTTCTGAACAGACAGATGCAAGCCTACAGAGAGAGCTACGACTGGCTCATACGCTGGATCGCAGATGCCAAACAAAGGCAGGACAAGCTCCACGCTGTGCCCATCGGTGGCAGCAAAGGCCTTCAGGAACAGCTTACACAGGAAAAG
Seq A exon
AAACTTCTCGAGGAGATTGAGAAAAACAAGGACAAGGTAGAGGACTGCCAGAAATTTGCTAAAGGATACATCGATGCCATAAAG
Seq C2 exon
GATTATGAGCTCCAGCTGGTGACTTATAAAGCGCTCGTGGAACCCATCGCCTCCCCTCTGAAGAAGGCCAAAATGGAGTCTGCTTCTGATGACATCATCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062590_MULTIEX1-10/14=9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.126 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF053358=DUF745=PD(67.8=68.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGGCTCATACGCTGGATC
R:
TTTGGCCTTCTTCAGAGGGGA
Band lengths:
180-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]