MmuEX6054406 @ mm10
Exon Skipping
Gene
ENSMUSG00000022565 | Plec
Description
plectin [Source:MGI Symbol;Acc:MGI:1277961]
Coordinates
chr15:76183091-76183879:-
Coord C1 exon
chr15:76183523-76183879
Coord A exon
chr15:76183362-76183445
Coord C2 exon
chr15:76183091-76183195
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTAACCCCTTCCTCCCTCAGGCC
3' ss Score
10.83
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AAGCTGCGGGCCCAGGCCGAGGCACAGCAGCCAGTATTCAACACCCTAAGAGATGAGTTGCGGGGGGCACAGGAGGTTGGTGAGCGGCTACAGCAGCGGCATGGTGAGCGGGACGTAGAAGTTGAGCGCTGGCGAGAACGTGTCACTCAGTTGCTGGAGCGCTGGCAGGCTGTTCTAGCCCAGACAGATGTGCGGCAGCGTGAGCTCGAGCAGCTGGGCCGCCAGCTTCGCTACTATCGTGAGAGCGCGGATCCTCTGAGCGCCTGGCTGCAGGATGCCAAGAGGCGGCAAGAGCAGATCCAGGCCGTGCCAATAGCCAACTGTCAGGCTGCGCGAGAACAGCTGCGCCAGGAGAAG
Seq A exon
GCCCTGCTGGAGGAGATTGAGCGTCATGGTGAGAAGGTTGAGGAGTGCCAGAAGTTTGCTAAGCAGTACATCAATGCAATCAAG
Seq C2 exon
GACTATGAGCTCCAGCTGATCACGTACAAGGCTCAGCTTGAACCCGTGGCCTCCCCTGCCAAGAAGCCCAAGGTTCAGTCTGGATCGGAGAGCGTCATCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022565-'62-59,'62-58,63-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.101 A=0.000 C2=0.246
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(64.2=58.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCTTCGCTACTATCGTG
R:
GCCTTGTACGTGATCAGCTGG
Band lengths:
169-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types