BtaEX6067656 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016729 | KCNT2
Description
potassium channel, sodium activated subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr16:6522399-6543765:+
Coord C1 exon
chr16:6522399-6522507
Coord A exon
chr16:6542436-6542585
Coord C2 exon
chr16:6543536-6543765
Length
150 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGCTTTTGTTGCAGAGA
3' ss Score
10.33
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
ATCATGTTGTTTGTGAAGAAGAGTTTAAATACGCCATGTTAGCTTTAAACTGTATATGCCCAGCAACATCTACACTTATTACACTACTGGTTCATACCTCTAGAGGGCA
Seq A exon
AGAAGGCCAGCAGTCGCCAGAACAGTGGCAGAAGATGTACGGCAGATGCTCTGGGAATGAAGTGTACCACATTGTTCTGGAAGAAAGCACATTTTTTGCTGAATATGAAGGAAAGAGCTTCACATATGCTTCTTTCCATGCACACAAAAA
Seq C2 exon
GTTTGGTGTCTGCTTGATTGGTATTAGGAGGGAGGATAATAAAAACATTTTGCTGAATCCAGGTCCTCGATATATTATGAATGCCACAGATACATGTTTTTATATTAATATTACCAAAGAAGAGAATTCAGCATTTAAAAACCACGACCATCAGAAAAAAAGCAATGTACCAAGGTCATTTTATCATGGACCGTCTAGATTGCCTGTACATAGCATAATTGCCAGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016729-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.141
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(34.0=100)
A:
PF0349313=BK_channel_a=FE(47.2=100)
C2:
PF0349313=BK_channel_a=PD(8.5=11.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCAGCAACATCTACACTT
R:
AGGCAATCTAGACGGTCCATGA
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]