MmuEX0025180 @ mm9
Exon Skipping
Gene
ENSMUSG00000052726 | Kcnt2
Description
potassium channel, subfamily T, member 2 [Source:MGI Symbol;Acc:MGI:3036273]
Coordinates
chr1:142380702-142406190:+
Coord C1 exon
chr1:142380702-142380810
Coord A exon
chr1:142404277-142404426
Coord C2 exon
chr1:142405961-142406190
Length
150 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGCTTGTGTTGCAGAGA
3' ss Score
10.25
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
ATCATGTTGTTTGTGAAGAAGAGTTTAAGTACGCCATGTTAGCTTTAAACTGTATATGCCCAGCAACATCTACACTCATTACACTACTGGTTCATACCTCTAGAGGGCA
Seq A exon
AGAAGGGCAGCAGTCACCTGAACAGTGGCAGAAGACTTACGGGAGGTGCTCAGGAAACGAAGTCTATCACATCGTTTTGGAAGAAAGTACATTTTTTGCTGAATATGAAGGGAAGAGTTTTACCTATGCTTCTTTTCATGCCCACAAAAA
Seq C2 exon
GTTTGGTGTCTGCTTGGTTGGTGTTAGGAGGGAGGATAATAAAAACATTTTGCTGAATCCAGGTCCTCGATACATTATGAATGCTTCAGACATATGTTTTTATATTAATATTACCAAAGAAGAAAATTCAGCATTTAAGAATCAAGACCAACAGAGAAAAAGTAATGTGTCAAGGTCATTTTATCATGGGCCTTCCAGATTGCCTGTCCACAGCATCATTGCCAGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052726_MULTIEX1-3/3=2-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.078 C2=0.126
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(31.9=100)
A:
PF0349313=BK_channel_a=FE(47.2=100)
C2:
PF0349313=BK_channel_a=PD(14.5=10.3)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGCAACATCTACACTCA
R:
GCAATCTGGAAGGCCCATGAT
Band lengths:
255-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: