RnoEX6044510 @ rn6
Exon Skipping
Gene
ENSRNOG00000013312 | Kcnt2
Description
potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol;Acc:735074]
Coordinates
chr13:57380035-57405227:+
Coord C1 exon
chr13:57380035-57380143
Coord A exon
chr13:57403475-57403624
Coord C2 exon
chr13:57404998-57405227
Length
150 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGCTTGTGTTGCAGAGA
3' ss Score
10.25
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
ATCATGTTGTTTGTGAAGAAGAGTTTAAGTACGCCATGTTAGCTTTAAACTGTATATGCCCAGCAACATCTACACTTATTACACTACTGGTTCATACCTCTAGAGGGCA
Seq A exon
AGAAGGGCAGCAGTCACCTGAACAGTGGCAGAAGACGTATGGGAGGTGCTCAGGAAATGAAGTCTACCACATCGTTCTGGAAGAAAGTACATTTTTTGCTGAATATGAAGGGAAGAGTTTTACCTATGCTTCTTTCCATGCACACAAAAA
Seq C2 exon
GTTTGGTGTCTGCTTGGTTGGTGTTAGGAGGGAGGATAATAAAAACATTTTGCTGAATCCAGGTCCTCGATACATTATGAATGCTTCAGACATATGTTTTTATATTAATATTACCAAAGAAGAAAATTCAGCATTTAAGAATCAAGACCAACAGAGAAAAAGTAATGTGTCAAGGTCATTTTATCATGGGCCTTCCAGATTGCCTGTCCACAGTATCATTGCCAGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013312-'22-27,'22-26,24-27=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.064 C2=0.122
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(31.9=100)
A:
PF0349313=BK_channel_a=FE(47.2=100)
C2:
PF0349313=BK_channel_a=PD(8.0=11.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCAGCAACATCTACACTT
R:
GCAATCTGGAAGGCCCATGAT
Band lengths:
256-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]