DreEX6082913 @ danRer10
Exon Skipping
Gene
ENSDARG00000079484 | kcnt1
Description
potassium channel, subfamily T, member 1 [Source:ZFIN;Acc:ZDB-GENE-091231-1]
Coordinates
chr21:4735134-4738893:-
Coord C1 exon
chr21:4738782-4738893
Coord A exon
chr21:4737526-4737675
Coord C2 exon
chr21:4735134-4735369
Length
150 bp
Sequences
Splice sites
3' ss Seq
ACACTTCTTTACTCTTTTAGAGA
3' ss Score
8.56
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
CAGATCACGTTGTGTGTGAGGAAGAGTTTAAATACGCCATGTTGGCTCTGAACTGTCTGTGTCCGGCCACTTCTACTCTGATCACTTTACTGGTTCACACATCTCGCGGACA
Seq A exon
AGAGGGCCAGCAGTCTCCGGAGCAGTGGCAGAGGATGTATGGTCGATGTTCGGGTAATGAGGTCTATCATATCCGCCTGGGTGACAGTATGTTCTTCAGGGAGTACAACAGCAAAAGCTTTACCTATGCTGCCTTTCACGCTCACAAAAA
Seq C2 exon
GTACGGTGTGTGTATGATTGGTGTGAAGAGAGAAGATAATAAGAGCATCTTGTTGAACCCTGGACCGCGACACATCATGTCTGCCAGCGACACCTGTTACTACATCAACATCACGAAAGAGGAAAACTCCGCCTTCATCTTCAGACAGGAGGAAGACCAGGGAAAGGGGCGGAGCCACTGCGACTTTTTAAACAGCCCGTCAGGACTACCTGTTCATAGCATTATTGCTAGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079484-'17-22,'17-21,19-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.089 C2=0.126
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(32.5=100)
A:
PF0349313=BK_channel_a=FE(46.2=100)
C2:
PF0349313=BK_channel_a=PD(7.9=11.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGAACTGTCTGTGTCCG
R:
TAAAAAGTCGCAGTGGCTCCG
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]