RnoEX6015928 @ rn6
Exon Skipping
Gene
ENSRNOG00000017283 | Kcnt1
Description
potassium sodium-activated channel subfamily T member 1 [Source:RGD Symbol;Acc:621106]
Coordinates
chr3:3348904-3349988:+
Coord C1 exon
chr3:3348904-3349012
Coord A exon
chr3:3349224-3349373
Coord C2 exon
chr3:3349750-3349988
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTGCCCTGCTCCTCCGGCAGGGA
3' ss Score
8.5
5' ss Seq
GAAGTACGT
5' ss Score
7.46
Exon sequences
Seq C1 exon
ACCATGTGGTGTGCGAGGAAGAGTGCAAGTACGCCATGCTGGCCCTGAACTGCATCTGCCCGGCCACCTCCACCCTCATCACCCTGCTGGTGCACACATCCCGTGGCCA
Seq A exon
GGAAGGACAGGAGTCACCAGAGCAGTGGCAGCGCATGTACGGGCGCTGCTCGGGCAACGAGGTGTACCACATTCGCATGGGTGACAGTAAATTCTTCCGGGAGTATGAGGGCAAGAGCTTCACCTACGCAGCCTTCCACGCGCACAAGAA
Seq C2 exon
GTATGGGGTGTGCCTCATTGGGCTGAAACGTGAAGAGAACAAGAGTATCCTGCTGAACCCGGGGCCACGGCACATCCTGGCCGCCTCTGACACCTGCTTCTATATCAATATTACCAAGGAGGAGAACTCAGCTTTCATCTTCAAGCAGGAGGAAAAGCAGAAGAGGCGGGGCCTGGCAGGGCAGGCACTTTACGAAGGGCCCTCCCGGCTCCCAGTGCACAGCATCATCGCCTCTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017283-'20-32,'20-31,22-32=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.098 C2=0.068
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(34.0=100)
A:
PF0349313=BK_channel_a=FE(47.2=100)
C2:
PF0349313=BK_channel_a=PD(8.5=11.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGCAAGTACGCCATGCT
R:
CGCCTCTTCTGCTTTTCCTCC
Band lengths:
257-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]