MmuEX0025170 @ mm9
Exon Skipping
Gene
ENSMUSG00000058740 | Kcnt1
Description
potassium channel, subfamily T, member 1 [Source:MGI Symbol;Acc:MGI:1924627]
Coordinates
chr2:25755892-25759113:+
Coord C1 exon
chr2:25755892-25756000
Coord A exon
chr2:25756729-25756878
Coord C2 exon
chr2:25758879-25759113
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTACCCTAGTCCTCTGGCAGGGA
3' ss Score
3.37
5' ss Seq
GAAGTACGT
5' ss Score
7.46
Exon sequences
Seq C1 exon
GATCACCAGACCATCCTTCGAGCCTGGGCTGTGAAGGACTTTGCCCCCAACTGTCCCCTCTATGTCCAGATCCTCAAGCCCGAAAACAAGTTTCACGTCAAATTTGCTG
Seq A exon
GGAAGGACAGGAGTCTCCCGAGCAGTGGCAGCGCACGTACGGGAGGTGCTCGGGCAACGAGGTGTACCACATTCGCATGGGTGACAGTAAATTCTTCCGGGAGTATGAGGGCAAGAGCTTCACCTACGCAGCCTTCCACGCGCACAAGAA
Seq C2 exon
GGACAGTGGCCATGGACCTGCAGAACACAGATTGCCGGCCCTCCCAGGGTGGCAGTGGCGGGGACGGCACAAAGCTGACTCTGCCCACCGAGAACGGCTCTGGTAGTCGACGCCCCAGCATCGCACCCGTTCTGGAGTTGGCAGACAGCTCAGCCCTGTTGCCCTGCGACCTGCTGAGTGACCAGTCAGAGGATGAGGTGACACCCTCGGACGACGAGGGGCTCTCTGTGGTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058740_MULTIEX2-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.196 C2=0.614
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=PU(9.4=27.0)
A:
PF0349313=BK_channel_a=FE(47.2=100)
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAACTGTCCCCTCTATGT
R:
TCCTCTGACTGGTCACTCAGC
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: