DreEX6014306 @ danRer10
Exon Skipping
Gene
ENSDARG00000104868 | KCNT1 (2 of 2)
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr5:64855689-64871409:+
Coord C1 exon
chr5:64855689-64855797
Coord A exon
chr5:64857077-64857226
Coord C2 exon
chr5:64871174-64871409
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTTTGTGTTTGTGTTTTCAGAGA
3' ss Score
10.41
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
ATCACGTGGTGTGTGAAGAGGAGTTCAAGTACGCCATGCTGGCCCTGAACTGTGTGTGTCCCGCCACCTCCACACTGGTCACCTTGTTGGTGCACACGTCTCGAGGACA
Seq A exon
AGAAGGTCAGACGTCTCCAGAACAGTGGCAGAGGACTTACGGTCGCTGCTCGGGGAATGAAGTTTATCACATCCGTTTGATGGACAGCAAGTTTTTTGGAGAATATGATGGGAAGAGTTTCACTTATGCCTCCTTCCACGCACACAAGAA
Seq C2 exon
GTATGGTGTGTGTCTAATCGGCACAAAGAGAGAAGACAACAAGAGCATTCTCCTGAACCCCGGCCCTCGCCACATCATGTCCGCCACAGACACCTGCTACTACATCAACATCACCAAAGAGGAGAACTCGGCCTTCATCTTCAAGCAGGAGGAGAAGCACAGTAAAGGCTTATCAGCCGCCGGCGTGTACGACGCTCCGTCTCGCCTCCCAGTGCAAAGCATCATTGCCAGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104868-'15-22,'15-20,16-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.197 C2=0.090
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(34.0=100)
A:
PF0349313=BK_channel_a=FE(47.2=100)
C2:
PF0349313=BK_channel_a=PD(8.5=11.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCAAGTACGCCATGCTGG
R:
CTGTGCTTCTCCTCCTGCTTG
Band lengths:
250-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]