BtaEX0018892 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018975 | KCNT1
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr11:103420935-103422463:+
Coord C1 exon
chr11:103420935-103421043
Coord A exon
chr11:103421815-103421964
Coord C2 exon
chr11:103422225-103422463
Length
150 bp
Sequences
Splice sites
3' ss Seq
ACGTCCTGCCCGCGCCCCAGGGA
3' ss Score
6.17
5' ss Seq
GAAGTACGG
5' ss Score
4.02
Exon sequences
Seq C1 exon
AGCACGTGGTGTGCGAGGAGGAGTGCAAGTATGCCATGCTGGCCCTCAACTGCATCTGCCCAGCCACGTCCACCCTCATCACCCTGCTGGTGCACACGTCCCGCGGCCA
Seq A exon
GGAAGGCCAGGACTCGCCAGAGCAGTGGCAGCGCATGTACGGACGCTGCTCGGGCAACGAGGTCTACCACGTGCGGATGGGGGACAGCAAGTTCTTCCGCGAGTACGAGGGCAAGAGCTTCACCTACGCCGCCTTCCACGCGCACAAGAA
Seq C2 exon
GTACGGCGTGTGCCTCATCGGCCTGAAGCGCGAGGACAATAAGAGCATCCTGCTGAACCCGGGCCCACGGCACATCCTGGCGGCCTCCGACACCTGCTTCTACATCAACATCACCAAGGAGGAGAACTCGGCCTTCATCTTCAAGCAGGAGGAAAAGCAGAAGAGGAAGGGCTTCGCGGGGCAGGGGCTGTACGAGGGCTCATCCCGCCTGCCGGTGCACAGCATCATTGCCTCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018975_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.078 C2=0.037
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(34.0=100)
A:
PF0349313=BK_channel_a=FE(47.2=100)
C2:
PF0349313=BK_channel_a=PD(8.5=11.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGGAGGAGTGCAAGTATG
R:
GCTTGAAGATGAAGGCCGAGT
Band lengths:
243-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development