GgaEX1056942 @ galGal3
Exon Skipping
Gene
ENSGALG00000001645 | KCNT1
Description
NA
Coordinates
chr17:8916521-8917710:-
Coord C1 exon
chr17:8917602-8917710
Coord A exon
chr17:8916855-8917004
Coord C2 exon
chr17:8916521-8916759
Length
150 bp
Sequences
Splice sites
3' ss Seq
GCACGCTGCTGTTGTTGCAGGGA
3' ss Score
6.32
5' ss Seq
GAAGTGAGG
5' ss Score
3.71
Exon sequences
Seq C1 exon
ATCACGTCGTCTGTGAGGAGGAGTGCAAGTACGCCATGCTGGCGCTCAACTGTGTCTGCCCCGCCACCTCCACGCTCATCACGCTGCTGGTGCACACCTCCCGTGGGCA
Seq A exon
GGAGGGCCAGGAGTCCCCGGAGCAGTGGCAGAGGATGTACGGGCGCTGCTCGGGCAATGAGGTCTACCACATCCGCATGGGTGACAGCAAGTTCTTCATGGAGTACGAGGGGAAGAGCTTCACCTACGCCGCCTTCCATGCGCACAAGAA
Seq C2 exon
ATACGGCGTCTGCCTGATCGGCATCCGCAGGGAGGAGAACAAGAGCATCCTGCTGAACCCCGGCCCGCGGCACATCATGGCTGCGTCCGACACCTGCTTCTACATCAACATCACCAAGGAGGAGAACTCTGCCTTCATCTTCAAGCAGGCAGAGAAGCAGAAGAAGAAGGGCTTTGCAGGCAGGGGCACCTATGACGGCCCTTCCCGCCTGCCCGTGCACAGCATCATCGCCAGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.118 C2=0.062
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(34.0=100)
A:
PF0349313=BK_channel_a=FE(47.2=100)
C2:
PF0349313=BK_channel_a=PD(8.5=11.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGTGCAAGTACGCCATG
R:
TGCTTCTCTGCCTGCTTGAAG
Band lengths:
251-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]