GgaEX1031351 @ galGal3
Exon Skipping
Gene
ENSGALG00000002451 | KCNT2
Description
NA
Coordinates
chr8:2788230-2792350:+
Coord C1 exon
chr8:2788230-2788338
Coord A exon
chr8:2790913-2791062
Coord C2 exon
chr8:2792121-2792350
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTTATCTGTACATGTTTCAGAGA
3' ss Score
7.05
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
ATCATGTTGTGTGTGAAGAAGAATTCAAATATGCTATGCTAGCTCTAAACTGTATATGTCCAGCTACCTCTACATTAATCACACTGCTGGTTCATACCTCCAGGGGACA
Seq A exon
AGAGAGTCAGCAATCATCAGAACAATGGCAGAAAATGTATGGCAGATGCTCTGGTAATGAAGTGTTTCACATTAACCTGGAAGAAAGTACTTTTTTTGCTGAATATGAAGGGAAAAGCTTCACATATGCTTCTTTCCATGCACATAAAAA
Seq C2 exon
GTTTGGAGTCTGTCTGATTGGTGTTAGAAAGGAAGATAACAAAAACATTTTGCTGAATCCAGGTCCTCGGTATATCATGAGTTCTACAGATATATGCTTTTATATAAATATCACCAAAGAAGAGAATTCTGCTTTCAAGAAGCAAGAAAAACACAGAAAAAGACATGAATCAAAGTTGTCTTATCATGGAGCTTCTAGGTTGCCTGTACACAGTATAATAGCCAGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451-'17-21,'17-20,19-21=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.161
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(34.0=100)
A:
PF0349313=BK_channel_a=FE(47.2=100)
C2:
PF0349313=BK_channel_a=PD(8.5=18.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACACTGCTGGTTCATACCTCC
R:
TGTGTACAGGCAACCTAGAAGC
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]