GgaEX1031351 @ galGal4
Exon Skipping
Gene
ENSGALG00000002451 | KCNT2
Description
potassium channel, sodium activated subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr8:2761974-2764546:+
Coord C1 exon
chr8:2761974-2762030
Coord A exon
chr8:2763109-2763258
Coord C2 exon
chr8:2764317-2764546
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTTATCTGTACATGTTTCAGAGA
3' ss Score
7.05
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
AACGGCACCATGGGAAGCTTTTCGACAACTCACTGGAACCAAGCAGACTCTGAACAG
Seq A exon
AGAGAGTCAGCAATCATCAGAACAATGGCAGAAAATGTATGGCAGATGCTCTGGTAATGAAGTGTTTCACATTAACCTGGAAGAAAGTACTTTTTTTGCTGAATATGAAGGGAAAAGCTTCACATATGCTTCTTTCCATGCACATAAAAA
Seq C2 exon
GTTTGGAGTCTGTCTGATTGGTGTTAGAAAGGAAGATAACAAAAACATTTTGCTGAATCCAGGTCCTCGGTATATCATGAGTTCTACAGATATATGCTTTTATATAAATATCACCAAAGAAGAGAATTCTGCTTTCAAGAAGCAAGAAAAACACAGAAAAAGACATGAATCAAAGTTGTCTTATCATGGAGCTTCTAGGTTGCCTGTACACAGTATAATAGCCAGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451-'23-27,'23-26,25-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=0.059 C2=0.179
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(15.2=100)
A:
PF0349313=BK_channel_a=FE(40.0=100)
C2:
PF0349313=BK_channel_a=PD(7.2=11.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGGGAAGCTTTTCGACA
R:
ACAGGCAACCTAGAAGCTCCA
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]