BtaEX6087016 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011994 | NDEL1
Description
nudE neurodevelopment protein 1-like 1 [Source:HGNC Symbol;Acc:HGNC:17620]
Coordinates
chr19:28649073-28658294:+
Coord C1 exon
chr19:28649073-28649209
Coord A exon
chr19:28652347-28652520
Coord C2 exon
chr19:28658203-28658294
Length
174 bp
Sequences
Splice sites
3' ss Seq
ACCTTTGCAACATTTTACAGATT
3' ss Score
8.93
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GGCAACAATAGTTTCACTGGAAGACTTTGAACAAAGGCTAAATCAAGCCATTGAACGAAATGCATTTTTAGAAAGTGAACTTGATGAAAAGGAATCTTTGTTGGTCTCTGTGCAGAGGTTAAAGGATGAAGCAAGAG
Seq A exon
ATTTAAGGCAAGAACTAGCTGTTCGGGAAAGACAACAGGAAGTAACTAGAAAATCAGCTCCTAGTTCTCCAACGCTGGACTGCGAAAAGATGGATTCTGCTGTCCAAGCATCACTTTCTTTGCCAGCTACCCCTGTTGGCAAAGGAACAGAGAACAATTTTCCTTCACCGAAAG
Seq C2 exon
CTATACCAAATGGTTTTGGTACCAGTCCACTGACTCCTTCAGCTAGGATATCGGCACTGAACATCGTGGGGGATCTCTTACGGAAAGTAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011994-'11-13,'11-11,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.808 C2=0.290
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=PU(20.3=87.2)
A:
PF048808=NUDE_C=FE(28.7=100)
C2:
PF048808=NUDE_C=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACAATAGTTTCACTGGAAGAC
R:
TACTTTCCGTAAGAGATCCCCCA
Band lengths:
226-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]