HsaEX6020870 @ hg38
Exon Skipping
Gene
ENSG00000166579 | NDEL1
Description
nudE neurodevelopment protein 1 like 1 [Source:HGNC Symbol;Acc:HGNC:17620]
Coordinates
chr17:8448550-8454887:+
Coord C1 exon
chr17:8448550-8448686
Coord A exon
chr17:8450780-8450953
Coord C2 exon
chr17:8454796-8454887
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGCAATATTTTACAGATT
3' ss Score
9.14
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GGCAACAATAGTTTCACTGGAAGACTTTGAACAAAGGCTAAACCAGGCCATTGAACGAAATGCATTTTTAGAAAGTGAACTTGATGAAAAGGAATCTTTGTTGGTCTCTGTACAGAGGTTAAAGGATGAAGCAAGAG
Seq A exon
ATTTAAGGCAAGAACTAGCAGTTCGGGAAAGACAACAGGAAGTAACTAGAAAGTCGGCTCCTAGCTCTCCAACTCTAGACTGTGAAAAGATGGACTCCGCCGTCCAAGCATCACTTTCTTTGCCAGCTACCCCTGTTGGCAAAGGAACGGAGAACACTTTTCCTTCACCGAAAG
Seq C2 exon
CTATACCAAATGGTTTTGGTACCAGTCCACTAACTCCCTCTGCTAGGATATCAGCACTAAACATCGTGGGGGATCTCTTACGGAAAGTAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166579-'28-32,'28-30,30-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.825 C2=0.306
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=PU(20.3=87.2)
A:
PF048808=NUDE_C=FE(28.7=100)
C2:
PF048808=NUDE_C=PD(22.5=93.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACAATAGTTTCACTGGAAGAC
R:
TACTTTCCGTAAGAGATCCCCCA
Band lengths:
226-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains