DreEX6069530 @ danRer10
Exon Skipping
Gene
ENSDARG00000010953 | ndel1a
Description
nudE neurodevelopment protein 1-like 1a [Source:ZFIN;Acc:ZDB-GENE-040115-2]
Coordinates
chr12:26386622-26387331:+
Coord C1 exon
chr12:26386622-26386758
Coord A exon
chr12:26386988-26387161
Coord C2 exon
chr12:26387240-26387331
Length
174 bp
Sequences
Splice sites
3' ss Seq
GCATATATATGCATTTGTAGACT
3' ss Score
5.25
5' ss Seq
CAGGTTGAT
5' ss Score
3.82
Exon sequences
Seq C1 exon
AGCCACCATAACATCTCTGGAGGACTTTGAGCAGAGGCTGAACCAGGCCATCGAGAGGAACGCTTTTCTGGAGAGTGAACTGGATGAGAAAGAATCTCTCCTTGTGTCTGTGCAGAGACTAAAAGATGAAGCCAGAG
Seq A exon
ACTTGCGGCAAGAGCTTGCAGTGCGAGACACCAGGTCAGAGGTGACGAGAATGTCAGCTCCCAGCTCTCCGACTCCGGATAACGACAAAACAGACTCTGCGGTCCAGGCATCCCTTTCTCTGCCTGCTACACCTCTTAGCAAGAATCTGGACAATGCTTTCACCAGTCAGACAG
Seq C2 exon
TTCTGGCCAACGGCTCCACTAACGCAGCCCTCACACCATCTGCTAGAATATCAGCGCTCAATATTGTGGGCGATTTACTGCGCAAAGTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010953-'7-10,'7-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=0.653 C2=0.081
Domain overlap (PFAM):
C1:
PF0076914=ERM=FE(22.0=100),PF048808=NUDE_C=PU(20.3=87.2)
A:
PF0076914=ERM=FE(27.8=100),PF048808=NUDE_C=FE(28.7=100)
C2:
PF0076914=ERM=FE(14.4=100),PF048808=NUDE_C=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACCATAACATCTCTGGAGG
R:
CCCAACTTTGCGCAGTAAATCG
Band lengths:
228-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]