MmuEX6086434 @ mm10
Exon Skipping
Gene
ENSMUSG00000018736 | Ndel1
Description
nudE neurodevelopment protein 1 like 1 [Source:MGI Symbol;Acc:MGI:1932915]
Coordinates
chr11:68833354-68840007:-
Coord C1 exon
chr11:68839871-68840007
Coord A exon
chr11:68836150-68836323
Coord C2 exon
chr11:68833354-68833445
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGCGACATTTTGCAGATT
3' ss Score
7.87
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GGCAACAATAGTTTCACTGGAAGACTTTGAACAAAGGCTAAATCAGGCCATTGAACGAAATGCATTCTTAGAAAGTGAGCTCGATGAAAAGGAATCTTTGTTGGTCTCAGTACAGAGGTTAAAGGATGAAGCCAGAG
Seq A exon
ATTTAAGGCAAGAACTAGCAGTTCGGGAACGACAACAGGAAGTGACCCGCAAGTCTGCCCCCAGCTCTCCAACTCTGGACTGTGAGAAGATGGATTCTGCGGTCCAGGCTTCACTCTCCTTGCCTGCAACGCCTGTTGGGAAAGGCACAGAAAACAGTTTTCCTTCACCAAAAG
Seq C2 exon
CTATACCAAACGGCTTTGGAACCAGTCCACTAACTCCTTCTGCTAGGATATCAGCACTAAACATCGTGGGAGATCTCTTGCGGAAAGTAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018736-'21-18,'21-16,23-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.831 C2=0.298
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=PU(20.3=87.2)
A:
PF048808=NUDE_C=FE(28.7=100)
C2:
PF048808=NUDE_C=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACAATAGTTTCACTGGAAGAC
R:
TACTTTCCGCAAGAGATCTCCCA
Band lengths:
226-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types